RnoEX6056080 @ rn6
Exon Skipping
Gene
ENSRNOG00000030719 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:RGD Symbol;Acc:1305103]
Coordinates
chr16:78572533-78584017:+
Coord C1 exon
chr16:78572533-78572721
Coord A exon
chr16:78578786-78578955
Coord C2 exon
chr16:78583861-78584017
Length
170 bp
Sequences
Splice sites
3' ss Seq
TAATGTCCCATTTATTTTAGCTG
3' ss Score
6.56
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AATATGACCTAGAACCCTGTGATGACCCTGGAGTCCCTGCCTACAGTCGCAGAATTGGGTTCCAGTTCGGTGTGGGTGACACCCTGGCTTTCACCTGCTTCCAGGGATACCGCTTAGAAGGTGCAACCAAGCTTACCTGCCTGGGTGGGGGACGCCGAGTGTGGAGTGCACCTCTGCCAAGGTGTGTGG
Seq A exon
CTGAATGTGGAGCAAGCGTCAAAGGAAATGAAGGAACATTACTCTCTCCAAATTTCCCATCCAATTATGATAATAACCATGAGTGTATCTATAAAATAGAAACAGAAGCCGGAAAGGGGATCCATCTCAGAGCCCGAACCTTCCAACTCTTCGAAGGAGACACTCTAAAG
Seq C2 exon
GTTTATGATGGAAAGGACAGCTCCTCGAGGTCACTGGGAGTCTTCACAAGAAGTGAACTGATGGGGCTGGTGCTAAACAGCACCTCCAACCACCTGAGGCTGGAGTTCAACTCTAACGGGTCAGATACCGCCCAAGGCTTCCAGCTCACCTACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030719-'11-14,'11-13,12-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.019
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
PF0043115=CUB=PU(50.9=94.7)
C2:
PF0043115=CUB=PD(47.2=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCAGAATTGGGTTCCAGT
R:
AGTTGAACTCCAGCCTCAGGT
Band lengths:
256-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]