MmuEX6035502 @ mm9
Exon Skipping
Gene
ENSMUSG00000031640 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:46362329-46368190:-
Coord C1 exon
chr8:46368081-46368190
Coord A exon
chr8:46363322-46363481
Coord C2 exon
chr8:46362329-46362438
Length
160 bp
Sequences
Splice sites
3' ss Seq
GTTCACCGCTGAGTTCACAGGTT
3' ss Score
0.73
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAAGAAGTGCCTGCTGAAGCACAGTGCAAGCGGAACACCCACCAGCATAAAGTCAGCGGACAACCTGGTGTCTGGATTCTCACTGAAGTCCTGTGCGCTTTCGGAGATAG
Seq A exon
GTTGCCCCATGGATATTTTCCAGCACTCTGCCTTTGCAGACCTGAATGTAAGCCAGGTCATCACCCCCGATGCCTTTGTGTGTCGCACCATCTGCACCTTCCATCCCAACTGCCTTTTCTTCACGTTCTACACGAATGAATGGGAGACAGAATCACAGAG
Seq C2 exon
AAATGTTTGTTTTCTTAAGACGTCTAAAAGTGGAAGACCAAGTCCCCCTATTCCTCAAGAAAACGCTATATCTGGATATAGTCTCCTCACCTGCAGAAAAACTCGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031640-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PU(61.9=96.3)
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGTGCCTGCTGAAGC
R:
CAGGGCGAGTTTTTCTGCAGG
Band lengths:
220-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: