BtaEX6106613 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15333209-15340226:+
Coord C1 exon
chr27:15333209-15333318
Coord A exon
chr27:15338816-15338975
Coord C2 exon
chr27:15340117-15340226
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCCGTGGGTTCACAGGCT
3' ss Score
8.25
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GAACACCTGCCTATTAAAACGGAGCCCACAGGGGACACCCACGCGTATAAAGGTGCTGAGTGATGTGGAGTCTGGATTCTCACTGAAGGCCTGTGGAAACTCGAAAATTG
Seq A exon
GCTGCCGCGTGGACATTTTCCAACACAGTGCGTTTTCAGATGTGGATGTTGCCGGAATTATCGCACCAGATGCTTTTGTGTGTCGAACCATCTGCACCTATCACCCCAGCTGTCTTTTCTTCACATTCTATACAAATGCATGGAAGACAGACTCACAGAG
Seq C2 exon
AAATGTTTGTTTCCTTAAGACTTCCCAAAGTGGGAGCCCGAGTTCCCCTACTCCTCAGGAAAATGCCATCTCTGGATACAGCCTTCTAACCTGCAAACAAACTCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PU(61.9=96.3)
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGCCTATTAAAACGGAGC
R:
CAGGCAGAGTTTGTTTGCAGG
Band lengths:
218-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]