RnoEX0047499 @ rn6
Exon Skipping
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50164590-50167340:+
Coord C1 exon
chr16:50164590-50164699
Coord A exon
chr16:50165856-50165976
Coord C2 exon
chr16:50167231-50167340
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCAGCACTTTGCCTTTGCAGACC
3' ss Score
8.58
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAAGAGTTGCCTGCTGAAGCGCAGTTCAAGTGGAACGCCCACCAGTATAAAGCCAGTGGACAACCTGGTGTCTGGATTCTCACTGAAGTCCTGTGCTCTCTCAGAGATCG
Seq A exon
ACCTGAATGTAAGCCATGTCGTCACCCCCGATGCCTTCGTGTGTCGCACCGTTTGCACCTTCCATCCCAACTGCCTCTTCTTCACATTCTACACGAATGAGTGGGAGACGGAATCACAGAG
Seq C2 exon
GAATGTTTGTTTTCTTAAGACATCTAAAAGTGGAAGACCAAGTCCCCCTATTATTCAAGAAAATGCTGTATCTGGATACAGTCTCTTCACCTGCAGAAAAGCTCGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118-'7-13,'7-12,8-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PU(61.9=96.3)
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGTTGCCTGCTGAAGCG
R:
CAGGGCGAGCTTTTCTGCAG
Band lengths:
220-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]