MmuEX6036334 @ mm10
Exon Skipping
Gene
ENSMUSG00000031808 | Slc27a1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Coordinates
chr8:71579907-71580701:+
Coord C1 exon
chr8:71579907-71580068
Coord A exon
chr8:71580145-71580214
Coord C2 exon
chr8:71580610-71580701
Length
70 bp
Sequences
Splice sites
3' ss Seq
GACCCTTGCTTTTTGTGCAGATC
3' ss Score
8.91
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CGGTGGCGGAGGTGAGCGAGCAGCTGGGGAAGAGCCTCCTCAAGTTCTGCTCTGGAGATCTGGGGCCTGAGAGCATCCTGCCTGACACGCAGCTCCTGGACCCCATGCTTGCTGAGGCGCCCACCACACCCCTGGCACAAGCCCCAGGCAAGGGCATGGATG
Seq A exon
ATCGGCTGTTTTACATCTATACTTCTGGGACCACCGGGCTTCCTAAGGCTGCCATTGTGGTGCACAGCAG
Seq C2 exon
GTACTACCGCATTGCTGCCTTTGGCCACCATTCCTACAGCATGCGTGCCGCCGATGTGCTCTATGACTGCCTGCCACTCTACCACTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031808-'25-21,'25-14,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
PF0050123=AMP-binding=FE(5.3=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTCCTCAAGTTCTGCTCT
R:
ACGCATGCTGTAGGAATGGTG
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types