RnoEX6055155 @ rn6
Exon Skipping
Gene
ENSRNOG00000018170 | Slc27a1
Description
solute carrier family 27 member 1 [Source:RGD Symbol;Acc:620927]
Coordinates
chr16:20009193-20009965:+
Coord C1 exon
chr16:20009193-20009354
Coord A exon
chr16:20009431-20009500
Coord C2 exon
chr16:20009874-20009965
Length
70 bp
Sequences
Splice sites
3' ss Seq
AACGTCTGCTTCTTCTGCAGATC
3' ss Score
10.71
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CGGTGGCGGAGGTGAGTGAGCAGCTGGGGAAGAGCCTGCTCAAGTTCTGCTCTGGAGATCTGGGGCCTGAGAGCGTCCTGCCTGACACGCAGCTTCTGGACCCCATGCTTGCTGAGGCGCCCACCACACCCCTGGCACAGGCCCCAGGCAAGGGCATGGATG
Seq A exon
ATCGGCTATTTTACATCTATACTTCTGGGACCACCGGACTTCCTAAGGCGGCCATTGTGGTGCACAGCAG
Seq C2 exon
GTACTACCGCATTGCAGCCTTCGGCCACCATTCCTACAGCATGCGGGCCAACGATGTGCTCTATGACTGCCTACCTCTCTACCACTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018170-'18-8,'18-7,19-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
PF0050123=AMP-binding=FE(5.3=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGAGCCTGCTCAAGTTC
R:
CTGTAGGAATGGTGGCCGAAG
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]