MmuEX6038561 @ mm10
Exon Skipping
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:111124479-111126328:+
Coord C1 exon
chr8:111124479-111124612
Coord A exon
chr8:111125672-111125753
Coord C2 exon
chr8:111126216-111126328
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGACCTTGATGTACCTGTAGGCC
3' ss Score
7.44
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACCTTCTTGCATTAGAACAGAGCAAGACTTTCTACAAGCCAGATTGGTTTGATATTGTGGAGTCAGAAGTCAAATGCTGCAAGGAAGCTGTGTGTGTCATTGACATGTCCTCTTTCACAAAATTTGAAATAACT
Seq A exon
GCCACATCGTTCATACTGGCATGCTCAATGAATATGGAGGATACGAAAACGACTGCAGCATCGCACGCCTGACCAAACGCAG
Seq C2 exon
TTTCTTTATGATTTCTCCAACCGATCAGCAGGTCCACTGTTGGGCCTGGCTTAACAAATACTTGCCGAAAGACAGCAACTTGCTGCTGGAGGACGTCACCTGGAAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624-'20-29,'20-28,21-29
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(5.5=26.7)
A:
PF0157116=GCV_T=FE(22.5=100)
C2:
PF0157116=GCV_T=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGCAAGGAAGCTGTGT
R:
ATTTCCAGGTGACGTCCTCCA
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types