DreEX0006644 @ danRer10
Exon Skipping
Gene
ENSDARG00000103288 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:50959895-50960501:+
Coord C1 exon
chr18:50959895-50960028
Coord A exon
chr18:50960121-50960269
Coord C2 exon
chr18:50960389-50960501
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTCAGTCC
3' ss Score
8.17
5' ss Seq
CAGGTTCAG
5' ss Score
2.78
Exon sequences
Seq C1 exon
ACCTGCTGGCGCTGGATCAGAGTAAGACCTTCTACAAGCCGGACTGGTTTGATATCGTGGGCGCGGAGGTGAAGTGCTGTAAGGAGGCGGTGTGTGTGATCGACATGTCCTCCTTCACCAAGTTTGAGCTCACA
Seq A exon
TCCTCAGGGGATCAGGCTCTGCATCTGCTGCAGCGTCTCTGTGCTAATGATCTGGATGTTCCGGTCGGGCACATCGTGCACACGGGCATGCTGAACGCCAGAGGAGGCTACGAGAACGACTGCAGCGTGGTGCGCCTCAGCAAGAACAG
Seq C2 exon
CTTCTTCATCATCTCTCCCACTGATCAGCAAGTGCACTGCTGGTCCTGGATGAAGCAGCACATGCCGAGCGACCCGCAGCTCCACCTGGAGGACGTCAGCTGGAAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103288-'20-16,'20-14,22-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(5.5=26.7)
A:
PF0157116=GCV_T=FE(22.5=100)
C2:
PF0157116=GCV_T=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGCTGGATCAGAGTAAG
R:
CTGTGTACTTCCAGCTGACGT
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]