GgaEX6008924 @ galGal4
Exon Skipping
Gene
ENSGALG00000002690 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr11:1778446-1780353:-
Coord C1 exon
chr11:1780220-1780353
Coord A exon
chr11:1779866-1780014
Coord C2 exon
chr11:1778446-1778558
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTGACTCTCATTTCCTGTAGTCC
3' ss Score
8.2
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATCTGCTGGATTTGGATCAGAGCAAAACCTTCTACAAACCGGACTGGTTTGATATTGTGGGTTCCGAAGTCAAGTGCTGCAAGGAAGCAGTCTGTGTGATCGACATGTCGTCTTTTACCAAGTTTGAGATAAGT
Seq A exon
TCCACAGGAGACCAGGCACTGCAGAGCCTGCAGTATCTCTTCTCCAACGACCTGGACGTGCCAGTGGGGCACGTTGTGCATACTGGCATGCTGAACGAGAACGGAGGGTATGAGAACGACTGCAGCATAGCACGCTTGAGCAAACGCAG
Seq C2 exon
CTTCTTTATGATTTCCCCTACTGACCAACAAGTCCATTGCTGGGCCTGGCTGAAGAACCATTTGCCTGAAGATAGCAACTTGACTATAGAAGATGTGACCTGGAAGTACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'15-14,'15-12,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(5.5=26.7)
A:
PF0157116=GCV_T=FE(22.6=100)
C2:
PF0157116=GCV_T=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGATTTGGATCAGAGCA
R:
CCGTGTACTTCCAGGTCACAT
Band lengths:
244-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]