RnoEX0064644 @ rn6
Exon Skipping
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43118177-43120001:-
Coord C1 exon
chr19:43119868-43120001
Coord A exon
chr19:43118916-43119064
Coord C2 exon
chr19:43118177-43118289
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCTTATCCCTTTCCTTGCAGTCC
3' ss Score
10.22
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACCTTCTTGCATTAGAACAGAGCAAGACTTTCTACAAGCCAGACTGGTTTGATATTGTGGAGTCTGAAGTCAAATGCTGTAAGGAAGCTGTGTGTGTCATTGACATGTCTTCTTTCACAAAATTTGAAATAACT
Seq A exon
TCCACTGGGGACCAGGCATTAGAAAGTCTGCAGTACCTTTTCTCCAATGACCTAGATGTGCCTGTAGGCCACATTGTTCACACTGGCATGCTCAATGAATATGGAGGGCACGAAAATGACTGCAGCATTGCTCGCCTGACCAAACGCAG
Seq C2 exon
TTTCTTCATGATCTCTCCAACTGATCAGCAGGTCCACTGTTGGGCCTGGCTTCACAAGTACTTGCCGAAAGACAGCAACTTGCTGCTGGAAGACGTCACCTGGAAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593-'21-21,'21-20,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(5.5=26.7)
A:
PF0157116=GCV_T=FE(22.5=100)
C2:
PF0157116=GCV_T=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTTGCATTAGAACAGAGCA
R:
TGTGTACTTCCAGGTGACGTCT
Band lengths:
246-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]