BtaEX6079215 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016471 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:1924599-1925819:-
Coord C1 exon
chr18:1925686-1925819
Coord A exon
chr18:1925164-1925312
Coord C2 exon
chr18:1924599-1924711
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCATTCCCCAACCCTACAGTCC
3' ss Score
6.36
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACCTCCTGGCCTTGGAGCAGAGCAAGACTTTCTACAAGCCAGACTGGTTTGAGATTGTGGAGTCCGAAGTCAAGTGCTGTAAGGAAGCCGTGTGTGTCATTGACATGTCCTCTTTCACAAAGTTTGAAATAACA
Seq A exon
TCCACCGGGGATCAGGCATTAGAAATTCTCCAGTACCTCTTCTCCAACGACCTTGACGTGCCCGTGGGCCACATCGTGCATACCGGCATGCTCAACGAGCGTGGTGGGTACGAAAATGACTGCAGCATAGCCCGGCTGAGCAAGCGCAG
Seq C2 exon
TTTCTTCATGATTTCTCCAACCGACCAGCAGGTCCATTGTTGGGCTTGGCTTAAGAAGTACATGCCAGAAGACAGCAACCTGATTCTGGAGGATGTCACCTGGAAATACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016471-'25-14,'25-13,28-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(5.5=26.7)
A:
PF0157116=GCV_T=FE(22.5=100)
C2:
PF0157116=GCV_T=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGCCTTGGAGCAGAG
R:
GTGTATTTCCAGGTGACATCCTCC
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]