MmuEX6039320 @ mm10
Exon Skipping
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:124591680-124597667:+
Coord C1 exon
chr8:124591680-124591798
Coord A exon
chr8:124594629-124594762
Coord C2 exon
chr8:124597499-124597667
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGCCCTGGCCACTAGTTC
3' ss Score
4.53
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAGACTGCTGGCTCCTGGCGGCCATTGCCTCCCTAACCCTCAATCAGAAAGCACTGACCAGGGTGGTTCCCCAGGACCAAGGATTTGGTTCTGGCTATGCCGGGATATTTCATTTCCAG
Seq A exon
TTCTGGCAGCACAGTGAGTGGCTGGACGTAGTGATTGATGACCGCCTGCCCACCTTCAAGGACCGCCTGGTCTTCCTCCACTCTGCTGATCACAATGAGTTCTGGAGCGCACTGCTGGAGAAAGCCTATGCCAA
Seq C2 exon
GCTTAACGGGAGTTATGAGGCACTGAAGGGAGGCAGTGCCATTGAAGCCATGGAAGACTTCACTGGGGGTGTGGCTGAGAACTTCCAAATCCGAGAGGCACCAGAGGATTTCTTTGAGATTCTGGAGAAGGCTTTGAAGCGTGGTTCCTTGCTGGGATGCTCCATAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.2=100)
A:
PF0064816=Peptidase_C2=FE(14.9=100)
C2:
PF0064816=Peptidase_C2=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAAGCACTGACCAGGGT
R:
TATGGAGCATCCCAGCAAGGA
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types