MmuEX6040116 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27579476-27583703:+
Coord C1 exon
chr14:27579476-27579758
Coord A exon
chr14:27583132-27583251
Coord C2 exon
chr14:27583547-27583703
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATTTATTTTAATTATTCAGGCT
3' ss Score
5.81
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
CTTTTTCTTTTTATCTAATGATGAAATGCTAGAGATTTTGTCAGAGACCAAAGATCCACTCAGAGTTCAGCCACACTTAAAAAAATGCTTTGAGGGCATCGCTAAGTTGGAGTTCCTGGCTAATCTGGATATTAAAGCCATGTATAGCTCTGAGGGTGAGCGAGTGGAGCTGATTGCTCTGATCTCCACGACTGCAGCGAGGGGCGCTGTAGAGAAATGGCTCATTCAAGTAGAAGACCTAATGCTCAGAAGTATTCGTGATGTGATTGCTGCCTCCAGACTG
Seq A exon
GCTTATCCAGAGTCTGCAAGAAAAGACTGGGTCAGAGAGTGGCCTGGCCAGGTTGTTCTTTGTGTGTCTCAAATGTTCTGGACTTCTGAGACACAGGAAATCATAAGTGGTGGAACAGAG
Seq C2 exon
GGATTAAAGAAGTACTACAAGGAACTCCAGTATCAACTAAATGACATTGTGGAGCTGGTGAGAGGGAAGTTGTCTAAGCAGACCAGGATCACACTGGGGGCTTTGGTTACAATTGATGTCCACGCTAGAGATGTCGTCATGGACATGATTGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(21.3=100)
A:
PF083938=DHC_N2=PD(0.5=5.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTAAGTTGGAGTTCCTGGC
R:
ACAACTTCCCTCTCACCAGCT
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: