BtaEX6094453 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44252019-44255677:+
Coord C1 exon
chr22:44252019-44252311
Coord A exon
chr22:44255092-44255211
Coord C2 exon
chr22:44255521-44255677
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATACACTTTAATTATTCAGGCT
3' ss Score
4.85
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTTTCCCTAGTTTTTTCTTCTTATCTAATGATGAAATGCTAGAGATTCTGTCAGAGACCAAAGATCCACTTAGAGTTCAGCCTCACTTGAAAAAATGCTTTGAAGGCATCGCCAAATTGGAGTTCCTTCCCAATTTGGATATTAAGGCCATGTATAGCTCTGAAGGTGAGCGAGTGGAGCTGATTGCACTAATTTCCACATCTGCAGCTCGAGGTGCCGTGGAAAAGTGGCTCATTCAAGTAGAAGATTTGATGCTTCGAAGTATTCATGATGTGATCGCGGCAGCCAGGCTG
Seq A exon
GCTTATCCAGAATCTGCAAGAAGAGACTGGGTTCGAGAGTGGCCTGGCCAGGTGGTACTTTGTGTTTCTCAAATGTTCTGGACCTCTGAGACACAGGAAGTTATAAGTGGTGGAACAGAG
Seq C2 exon
GGATTAAAGAAGTACTATAAGGAACTTCAGAATCAACTAAATGATATTGTGGAGCTGGTAAGAGGAAAACTATCAAAGCAGACCAGGATTACTCTGGGGGCTTTGGTTACTATCGATGTCCATGCTAGAGATGTGGTCATGGACATGATTGATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'17-15,'17-14,18-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(23.3=100)
A:
PF083938=DHC_N2=PD(0.5=5.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGGTGAGCGAGTGGAG
R:
AGTAACCAAAGCCCCCAGAGT
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]