GgaEX6010284 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8682639-8684808:-
Coord C1 exon
chr12:8684526-8684808
Coord A exon
chr12:8683145-8683264
Coord C2 exon
chr12:8682639-8682795
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACTCTATTTATCTCTTTCAGGCA
3' ss Score
10.5
5' ss Seq
GAGGTACTA
5' ss Score
6.36
Exon sequences
Seq C1 exon
CTTCTTTTTCTTGTCTAATGATGAAATGCTGGAGATCCTGTCAGAGACCAAAGATCCTCTCAGAGTTCAGCCTCACTTGAAGAAGTGTTTTGAAGGCATTGCAAAGCTACATTTCCTTCCCAATCTGGATATAAAAGCAATGTACAGTTCTGAAGGCGAGCGTGTTGAATTTATTTCAACAATTTCTACTTCTGAAGCTCGAGGCGCAGTGGAGAAGTGGTTGATTCAAGTAGAAGATATTATGCTGAAGAGCATACACAATGTTATTGCTAAATCAAGAATG
Seq A exon
GCATATCTAGAGACTGAGAGAAAAAGTTGGGTTCTGGAGTGGCCTGGACAAGTAGTATTGTGCGTATCTCAAATGTTCTGGACAAGTGAGGTCCATGAAGTTCTTTGCAGTCAGCCAGAG
Seq C2 exon
GGCTTAAAGGATTATTATGATACACTTCAGCTTCAACTTAATGATATTGTAGAGCTGGTAAGAGGAAAACTGTCAAAGCAAACGAGGACAACACTGGGTGCCTTGGTTACTATTGATGTTCATGCTAGAGATGTCCTCATGGAAATGATTGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(22.7=100)
A:
PF083938=DHC_N2=PD(0.5=5.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGCGAGCGTGTTGAATT
R:
GTAACCAAGGCACCCAGTGTT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]