RnoEX0028448 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2430933-2435205:+
Coord C1 exon
chr16:2430933-2431215
Coord A exon
chr16:2434451-2434570
Coord C2 exon
chr16:2435049-2435205
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATTTATTTTAATTATTCAGGCT
3' ss Score
5.81
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
CTTTTTCTTTTTATCTAATGATGAAATGCTAGAGATTTTGTCAGAGACCAAAGATCCACTCAGAGTTCAGCCACACTTAAAAAAATGCTTTGAGGGCATCGCTAAGTTGGAGTTCCTGACTAATCTGGATATTAAAGCCATGTACAGCTCTGAGGGTGAACGAGTGGAGCTGATTTCAGTGATTTCCACGTCTGCAGCGAGGGGTGCCGTAGAGAAATGGCTCATTCAAGTAGAAGACCTAATGCTCAGAAGTATCCATGATGTGATTGCTGCATCTAGACTG
Seq A exon
GCTTACCCAGAATCTGCAAGGAAAGACTGGGTCAGAGAGTGGCCTGGCCAGGTTGTTCTTTGTGTGTCTCAGATGTTCTGGACTTCTGAGACACAGGAAGTCATAAGTGGTGGAAACGAG
Seq C2 exon
GGGTTAAAGAAGTACTACAAGGAACTCCAGTATCAACTAAATGACATTGTGGAGCTGGTGAGAGGGAAGTTATCTAAGCAGACCAGGATCACTCTGGGGGCTTTGGTTACGATTGATGTCCACGCTAGAGATGTTGTCATGGACATGATTGATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'26-31,'26-30,27-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(21.3=100)
A:
PF083938=DHC_N2=PD(0.5=5.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGGTGAACGAGTGGAG
R:
TAACCAAAGCCCCCAGAGTGA
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]