DreEX6079816 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19618817-19619522:-
Coord C1 exon
chr23:19619240-19619522
Coord A exon
chr23:19619047-19619166
Coord C2 exon
chr23:19618817-19618973
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTGATGTAATGTATTCAGGCT
3' ss Score
4.92
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
ATTCTTTTTCCTATCAAATGACGAGATGCTGGAGATTCTCTCAGAAACCAAAGATCCCACGCGAGTGCAGCCACACTTGAAGAAATGCTTTGAGGGCATTGCCAAACTGGACTTCCTGCCCAATCTGGACATCCAAGCCATGTACAGCAGCGAGGGTGAGCGTGTGGAGTTCATCCAGCTCATCTCAACTTCTGAAGCACGAGGAGCTGTGGAGAAGTGGCTGGTGCAGGTGGAGGACATAATGCTGAGAAGCATCAGAGATGTGATCAATCGCTCCAGGCTG
Seq A exon
GCTTATCCGGAGACTAAAAGGAGTCAGTGGGTACGTGAGTGGCCTGGGCAGGTGGTCCTCTGTGCTTCTCAGATGTACTGGACGGTGGAGGTGCATGAGGCCATCAGAAGTAGTGCTAAT
Seq C2 exon
GGTCTTAAGAAATACTATGAGCAGTTGCAGAATCAGCTGAATGATATTGTGGAGCTGGTCAGGGGGAAGCTGCCCAAGCAGACGCGCACCACTCTGGGAGCCCTGGTGACCATTGATGTGCATGCCAGAGATGTGATCCTGGAGTTGATTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(21.3=100)
A:
PF083938=DHC_N2=PD(0.5=5.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGCGTGTGGAGTTCATC
R:
CATCAATGGTCACCAGGGCTC
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]