MmuEX6040217 @ mm10
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29058347-29062540:-
Coord C1 exon
chr14:29062473-29062540
Coord A exon
chr14:29058602-29058647
Coord C2 exon
chr14:29058347-29058444
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTTTGACTCCCAGGCC
3' ss Score
9.29
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTTAGGTGTGGCGCTCTCCAGGGGCCATGGGAAATACTTCTTCCGAGGGAATGTAACCATTGAAGAAG
Seq A exon
GCCTCCATGACTTAGAACATCCTGACGTGTCCTTGGCAGATGAATG
Seq C2 exon
GTCCTACTGCAACACTGACCTGCACCCAGAGCACCGCCATCTATCTCAACTGGAAGCCATTAAGCTCTACCTCAAAGGCAAGGAGCCTCTGCTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'45-55,'45-54,46-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGGGCCATGGGAAATA
R:
TCCTTGCCTTTGAGGTAGAGCT
Band lengths:
137-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types