MmuEX6040539 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32099697-32100103:-
Coord C1 exon
chr14:32099930-32100103
Coord A exon
chr14:32099909-32099925
Coord C2 exon
chr14:32099697-32099816
Length
17 bp
Sequences
Splice sites
3' ss Seq
GGAACAGTTCAAGAGTCTCTTTA
3' ss Score
-29.46
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAATGACCATGATGTTTGAGGTGCAGGACCTGGCAGTGGCCTCACCAGCCACAGTCTCCCGCTGTGGCATGGTGTACCTGGAGCCCAGCATCCTAGGGCTCATGCCATTCGTTGAGTGCTGGCTAAAACGTCTCCCTGCCATAATAAAGCCCTACGAGGAACAGTTCAAGAGT
Seq A exon
TTACCAAGTACCTGGAG
Seq C2 exon
AATTCCATCAACTTTGTTCGGAACACAGTGAAGGAAGTGATTGCCTCAACTAACAGCAACCTGACAATGAGCCTCCTCAAGCTCCTTGACTGCTTCTTCAGACCTTTCCTACCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'39-39,'39-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(14.3=36.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTACGAGGAACAGTTCA
R:
AGGAGCTTGAGGAGGCTCATT
Band lengths:
112-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: