DreEX6092641 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34418163-34420085:-
Coord C1 exon
chr11:34419908-34420085
Coord A exon
chr11:34419633-34419827
Coord C2 exon
chr11:34418163-34418282
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTGACATTTTGACAGGCG
3' ss Score
5.81
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GACAGATGGTATACTGTCTTGTCTCATTCGGGATGGAGCTTCATCCATGGAGCAGGAAAAGAAGTGGTACATGTTTGACGGGCCTGTAGATGCCGTGTGGATCGAGAACATGAACACAGTTCTGGATGACAACAAGAAACTGTGTCTGAGTTCCGGAGAGATCATCAAACTCTCTGAT
Seq A exon
GCGATGACAATGATGTTTGAGGTGCAGGATTTGGCGGTGGCCTCTCCTGCCACAGTTTCTCGCTGTGGCATGGTGTATCTGGAGCCGAGCATTCTGGGTTTGACTCCATTCACAGAGTGTTGGCTCCGAACAATCCCTGACATGTTTCGGCCCTACGCGGATCAAATCAACTCGCTCTTTACAAGGTTCTTGCAG
Seq C2 exon
GACTCCATCAGATTTGTCAGAGAGTCCATAAAGGAGGTGATCACCTCCATGGACAGCAATCTCACCTGCTCTCTGCTCAAACTACTGGACTGCTTCTTTCAGCCGTTCATCCCACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'40-40,'40-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(40.1=100)
A:
PF077289=AAA_5=PD(15.0=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCATTCGGGATGGAGCT
R:
AGCAGTCCAGTAGTTTGAGCA
Band lengths:
253-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]