RnoEX6054780 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7371097-7372256:-
Coord C1 exon
chr16:7372079-7372256
Coord A exon
chr16:7371306-7371500
Coord C2 exon
chr16:7371097-7371216
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATGTTATGTCTTGGCACCAGGCA
3' ss Score
5.97
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACAGATGGGATCTTCCCCTCCCTCATCCGGGCTGGTGCCATCGCTTCTGACACCAATAAGAAATGGTACATGTTTGACGGGCCGGTGGATGCTGTCTGGATCGAGAACATGAACACTGTGCTGGATGACAACAAGAAGCTGTGCCTCAGCTCTGGGGAGATCATCAAACTCACAGAG
Seq A exon
GCAATGACCATGATGTTCGAGGTGCAGGACTTGGCAGTGGCCTCGCCAGCCACAGTTTCTCGCTGCGGCATGGTGTACCTGGAGCCCAGCATCCTAGGGCTCATGCCATTCGTTGAGTGCTGGCTAAAACATCTCCCTTCCATAATAAAGCCCTACGAGGAGCAGTTCAAGACACTCTTTGTCAAGTTCCTGGAG
Seq C2 exon
AGCTCCATCGCCTTTGTCCGAACCACAGTGAAGGAAGTGGTTGCCTCAACGAACAGCAACCTGACCATGAGCCTCCTCAAACTACTCGACTGTTTCTTCAAGCCTTTCCTACCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'49-46,'49-45,50-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(40.1=100)
A:
PF077289=AAA_5=PD(14.3=32.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTTCCCCTCCCTCATCC
R:
GCTCATGGTCAGGTTGCTGTT
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]