BtaEX0011545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49066859-49068138:-
Coord C1 exon
chr22:49067961-49068138
Coord A exon
chr22:49067066-49067260
Coord C2 exon
chr22:49066859-49066978
Length
195 bp
Sequences
Splice sites
3' ss Seq
CATGCAGTTCATCTCGGCAGGCG
3' ss Score
4.97
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GACAGATGGGATCTTCTCCTCCCTCATCCGGATGGGGGCCATCACCTCCGACACCAGCAAGAAGTGGTACATGTTCGATGGGCCAGTGGACGCCGTCTGGATTGAGAACATGAACACGGTGCTCGACGACAACAAGAAGCTGTGCCTCAGCTCTGGGGAGATCATCAAGCTCACAGAG
Seq A exon
GCGATGACCATGATGTTCGAGGTGCAAGACCTGGCGGTGGCCTCCCCAGCCACAGTATCCCGCTGCGGCATGGTGTACCTGGAACCCAGCATCCTGGGGCTCATGCCCTTTGTCGAGTGCTGGCTGAGGCGTATCCCTGCCTTACTCAGGCCCTTTGAGGAGCAGTTCAAGTCCCTCTTTATCTCCTTCCTGGAG
Seq C2 exon
GAGTCCCTTGCTTTCGTCCGGTCCTCGGTGAAGGAGGTGATCGCCTCAACCAACAGCAACCTGACCACGAGTCTCCTCAAGCTGCTGGACTGCTTCTTCAAGCCCTTCCTGCCCAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'38-41,'38-40,39-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(40.1=100)
A:
PF077289=AAA_5=PD(14.3=32.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGACACCAGCAAGAAGTG
R:
GGCAGGAAGGGCTTGAAGAAG
Band lengths:
246-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development