GgaEX6009942 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2897514-2898687:+
Coord C1 exon
chr12:2897514-2897691
Coord A exon
chr12:2897910-2898104
Coord C2 exon
chr12:2898568-2898687
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTTGGAATTTCCAGAGT
3' ss Score
6.62
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GACAGATGGAATCCTTTCCTCACTCATCCGACAGGGAGCCATGGCCACTGACACTAGCAAGAAGTGGTACATGTTTGATGGGCCAGTTGATGCTCTGTGGATTGAGAACATGAACACGGTGCTGGATGACAATAAGAAGCTGTGTCTCAGTTCAGGCGAAATCATCAAGATGACAGAG
Seq A exon
AGTATGACCATGATGTTTGAAGTCCAGGATTTGGCTGTTGCATCCCCTGCCACAGTGTCCCGTTGTGGCATGGTTTACCTGGAACCCAGCATCTTGGGGCTGGAGCCCTTCACGGAATGCTGGCTGCAAAAGCTCCCAGATGTCATGCAGCCCTTCTCACAGCAGCTGGCATCTCTCTTCACGAGGTTCCTCAAG
Seq C2 exon
GAAGCTATTGTCTTTGTCCGGGGATCTGTGGAGGAGATAATAGCCTCAACAGATGGCAACCTCACAAGGAGCCTCCTCGTGCTATTGGAATGTTTGTTTCAGCCTTTCATTCCTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'37-40,'37-39,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(40.1=100)
A:
PF077289=AAA_5=PD(14.3=32.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCACTCATCCGACAGGG
R:
TTCCAATAGCACGAGGAGGCT
Band lengths:
253-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]