MmuEX7023130 @ mm10
Exon Skipping
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31286511-31287889:-
Coord C1 exon
chr14:31287712-31287889
Coord A exon
chr14:31286723-31286917
Coord C2 exon
chr14:31286511-31286630
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACATTCTACCTTGGCACCAGGCA
3' ss Score
5.05
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACAGATGGAATTTTCTCCTCCCTCATCCGGGCCGGGGCCATCGCATCTGACACCAACAAGAAATGGTACATGTTCGACGGGCCGGTGGATGCCGTCTGGATAGAGAACATGAACACCGTGCTGGATGACAATAAGAAGCTGTGCCTCAGCTCTGGGGAGATCATCAAACTCACAGAG
Seq A exon
GCAATGACCATGATGTTTGAGGTGCAGGACCTGGCAGTGGCCTCACCAGCCACAGTCTCCCGCTGTGGCATGGTGTACCTGGAGCCCAGCATCCTAGGGCTCATGCCATTCGTTGAGTGCTGGCTAAAACGTCTCCCTGCCATAATAAAGCCCTACGAGGAACAGTTCAAGAGTCTCTTTACCAAGTACCTGGAG
Seq C2 exon
AATTCCATCAACTTTGTTCGGAACACAGTGAAGGAAGTGATTGCCTCAACTAACAGCAACCTGACAATGAGCCTCCTCAAGCTCCTTGACTGCTTCTTCAGACCTTTCCTACCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'45-48,'45-47,46-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(40.1=100)
A:
PF077289=AAA_5=PD(14.3=32.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTCCTCCCTCATCCGGG
R:
AGGAGCTTGAGGAGGCTCATT
Band lengths:
253-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types