MmuEX6041772 @ mm10
Exon Skipping
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:56588419-56590513:+
Coord C1 exon
chr14:56588419-56588494
Coord A exon
chr14:56589879-56589980
Coord C2 exon
chr14:56590364-56590513
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAATGTACACTGCTTTGCAGGTA
3' ss Score
5.86
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGTTTCTGCAGAGAATGTTGAAATTCCCCCCTTTCTTCAAGACTTTGAAGTTGTGAAATATAACATCTTGGAAAAG
Seq A exon
GTAGGAGGCCCCGAGACTGTGGTGGTAGAGCTGCAGAGCTCCCAGGACCCAGAGAGCTGCCCCTTTGTGATAACAGCACACTTCCTCCTGGCTGATCAAAAG
Seq C2 exon
ACCAGGAGAGAGAGCACTGGAAAGCAAACTTCTGAAGGTGCAATTGAATATTATGAAAGTTATGTGGAAGACCTGAAGAGACAAGGATTTCTGCTCCAAGAACACTTTACGGCCGAAGCAACACAGTTAGCGTCTGAGAAACTGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509-'9-15,'9-12,10-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.157 C2=0.240
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCTGCAGAGAATGTTGAA
R:
CGCCTGCAGTTTCTCAGACG
Band lengths:
226-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types