DreEX6035893 @ danRer10
Exon Skipping
Gene
ENSDARG00000069934 | parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-387]
Coordinates
chr9:20674512-20676794:+
Coord C1 exon
chr9:20674512-20674590
Coord A exon
chr9:20676427-20676525
Coord C2 exon
chr9:20676636-20676794
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTGATTATGTTGCAGGTA
3' ss Score
10.14
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
AGTATACAAAGGTGCTGACCATGACTTGCCTGAATTCCCTTCATTTTTTCAAGTGGCCAAGTACTCGGTTTTTGAAAAG
Seq A exon
GTAAAACCCAAGACTTTGTCTGTTTTGGAGCTGCAGAGTGTCAATGGACGAGCAGGCCAGCAGTATCGTGTGCTCTGTTCAGTGTTGCGTGAAGCTGAG
Seq C2 exon
ACCGCAGTGCTCCAGGACAAGCTTGTTTTCTGTGAGACGTCTGAAGATGCTGTGGAAGCTTATCTGATGCTGATGAAGGACATGGAGACTCAGGGATTCACAAAGACACACACACTTCCTGCTGAGGTTGAGCACTTGGCATCTTACAGCCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069934-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTGGCCAAGTACTCGGT
R:
ATGCCAAGTGCTCAACCTCAG
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]