BtaEX6056679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025400 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr12:36716507-36719674:-
Coord C1 exon
chr12:36719599-36719674
Coord A exon
chr12:36718730-36718843
Coord C2 exon
chr12:36716507-36716656
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAGAGCAACATGTTTTCCAGGTT
3' ss Score
2.42
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTTATGCAGAGGGTGTTGAAATTCCTCATTTTCCTCAAGATTTTGAAGTTGCAAAATATAACATCTTGGAAAAA
Seq A exon
GTTGTGACAGAGGGAGGTAAGGAGACCGCCGTGGTGGAGCTGCAGTGCCTCCAGGGCCCTGGGGACCGTGGCTTTCTGATATGCACACACTTCCTCCTGGCCACTGGCACCCAG
Seq C2 exon
ACCAGAAGGCAGTCCTCTGTGAAGAAAACCTCTGCAGACGCAAGTGAATACTATGAGAATTATATTGAGGAACTGAAGAAACAAGGCTTTCTACTGAGAGAACATTTTACACCTGAAGCAACCCAGTTAGCATCTGAAAAACTGCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025400-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTATGCAGAGGGTGTTGAA
R:
TGCTTGCAGTTTTTCAGATGCT
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]