HsaEX6039547 @ hg38
Exon Skipping
Gene
ENSG00000102699 | PARP4
Description
poly(ADP-ribose) polymerase family member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr13:24494573-24499376:-
Coord C1 exon
chr13:24499301-24499376
Coord A exon
chr13:24498116-24498229
Coord C2 exon
chr13:24494573-24494722
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAGCACATCCTGTTTTCCAGGTG
3' ss Score
6.14
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTTTGGTATGCAGAATGTTGAAATTCCTCATCTTCCTCAAGATTTTGAAGTTGCAAAATATAACACCTTGGAGAAA
Seq A exon
GTGGGAATGGAGGGAGGCCAGGAAGCTGTGGTGGTGGAGCTTCAGTGTTCGCGGGACTCCAGGGACTGTCCTTTCCTGATATCCTCACACTTCCTCCTGGATGATGGCATGGAG
Seq C2 exon
ACTAGAAGACAGTTTGCTATAAAGAAAACCTCTGAAGATGCAAGTGAATACTTTGAAAATTACATTGAAGAACTGAAGAAACAAGGATTTCTACTAAGAGAACATTTCACACCTGAAGCAACCCAATTAGCATCTGAACAATTGCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGTATGCAGAATGTTGAAATT
R:
TGCTTGCAATTGTTCAGATGCT
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains