RnoEX0001703 @ rn6
Exon Skipping
Gene
ENSRNOG00000051196 | AABR07018038.1
Description
NA
Coordinates
chr15:36824060-36828644:+
Coord C1 exon
chr15:36824060-36824135
Coord A exon
chr15:36825216-36825326
Coord C2 exon
chr15:36828495-36828644
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAACGTACCCTGTATTGCAGATG
3' ss Score
6.7
5' ss Seq
AAGGTAGCG
5' ss Score
6.91
Exon sequences
Seq C1 exon
GGTCTCTGCGGAGAATGTTGAAATTCCTCCCTTTCTTCAGGACTTTGAAGTTGTGAAATATAACGTCTTGAAAAAA
Seq A exon
ATGGGAGCAGACGGAGGCCCAGAGACGGTGGTGGTGGAGCTGCAGAGCTCCCGAGACCCGGGGAGCTCCCCCTTTGTGATAGCAGCACACTTCCTCCTGGCTGAACAAAAG
Seq C2 exon
ACGAGAAGAGCGAGCACTGGAAAGCAAACCTCCAAAGGTGCAATCGAGTATTATGAGAGTTATGTGGAAGACCTGAAGAGACAAGGATTCCTGCTCCAAGAGCACTTCACGGCCGAAGCAACGCAGTTAGCATCCGAGAAGCTGCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051196_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.216 C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCGGAGAATGTTGAAA
R:
GCAGCTTCTCGGATGCTAACT
Band lengths:
219-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]