MmuEX6044490 @ mm9
Exon Skipping
Gene
ENSMUSG00000031134 | Rbmx
Description
RNA binding motif protein, X chromosome [Source:MGI Symbol;Acc:MGI:1343044]
Coordinates
chrX:54639207-54641824:-
Coord C1 exon
chrX:54641699-54641824
Coord A exon
chrX:54641238-54641320
Coord C2 exon
chrX:54639207-54640570
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAAATTTGCTTTTTATTTAGTGA
3' ss Score
4.61
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CTATTCAAGCAGAGAATATCCAAGTTCTCGAGATACACGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCACGAGATGACTATCCATCAAGAGGCTATAG
Seq A exon
TGATAGAGATGGCTATGGTCGGGATCGGGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq C2 exon
GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGCGTGGGCAGACAAGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAGGAACAAACAAAACTTTTGGACCAAAAAAATCCCCATTCAAAGCAACAAACAAAAGTGGAAACTTTCTGTCATAAACTACCCAAGGACTACTAAAAGGAAAAATTGTGTTACCTTTTTAAAATTTCCTGTTCCCTTTTAATAATTTTTATGTTCTTGTGAGGGAAAAAGTAAGACGTGTTTAATTTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031134-'12-10,'12-9,13-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGATTATGCACCACCACC
R:
CGTCACGTGAGCTGCTGTAAT
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: