DreEX6058373 @ danRer10
Exon Skipping
Gene
ENSDARG00000014244 | rbmx
Description
RNA binding motif protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
Coordinates
chr14:31517387-31518926:-
Coord C1 exon
chr14:31518792-31518926
Coord A exon
chr14:31518616-31518707
Coord C2 exon
chr14:31517387-31518074
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTTTTCCCTCTCAGTGA
3' ss Score
10.31
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
TTATTCCAGCCGTGACTACATGAGCTCACGGGACAGCAGAGACTATGGCCCACCTCCACGAGATTATCCATACCGGGAGTATTCAGGCCATTCCAGTTCCAGAGATGACTATGGGTCAGGATCAAGAGGCTATAG
Seq A exon
TGATCGTGATGGCTATGGTGGAGGACGAGAGCCCCGGGGTTATATAGATCGACCCAGTGCAGGCTCCTATAGAGATCCTTATGATGGTTACG
Seq C2 exon
GTAACTCACGCAGCGCCCCACCCTCAAGGGGTCCCCCTCCGTCCTACAGTGGGAGTGGCGGAAGCAGTCGTTATGACGACTATGGCAGCAGTTCCCGGGATGGATATGGCAGTCGTGACAGTTATCCCAGCAGTCGGAGTGACCCGTACTCCACTAATCGTGGTGACCGACCGGGTAGGCAGGAGCGAGGGCCTCCCCCACTCGAAAGAGGCTATCCTCGTGAATACAGCAGCTCAAGCCGTGGGGCACCTCGTGGGGGTGGACGCGGTGGCCGCCGACCTGATAGAGGAATGGGCCGAAACCGATACTGAAATGGACTGTGGAGATGAAAAATGAGTCGGAGAAATGAAATGGTGGCTTCTCGTTCAAAAGACTTTGAGCTTCAAAAGCGTTCTTTTAAACACTGAACTTCAAGCTTCCGTTTCAAGCTGTACCCAAACTTGTGACGTTTTTTTTATTTTGTAATTTTTAAATGCAAAGTTCTTTTCTCTACCCAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014244-'9-16,'9-15,10-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCCATTCCAGTTCCAGA
R:
GGGATAACTGTCACGACTGCC
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]