RnoEX6027351 @ rn6
Exon Skipping
Gene
ENSRNOG00000000866 | Rbmx
Description
RNA binding motif protein, X-linked [Source:RGD Symbol;Acc:1565256]
Coordinates
chrX:159884885-159887133:-
Coord C1 exon
chrX:159887008-159887133
Coord A exon
chrX:159886543-159886625
Coord C2 exon
chrX:159884885-159885878
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAAAGTTGCTTTTTCTGTAGTGA
3' ss Score
2.92
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CTATTCAAGCAGAGACTATCCAAGTTCTCGAGATACACGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCACGAGATGACTATCCATCAAGAGGCTATAG
Seq A exon
TGATAGAGATGGATATGGTCGGGAGCGTGACTATTCGGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq C2 exon
GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACACAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGCGTGGGCAGACAAGAACGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGCAGAAGCAGATACTAGGAACAAACAAAACTTTTGGACCAACAATCCCCATTCAAAGAAACAAACAAAAAAATGGAAACTTTCTGTCATAAACTACCCAAGGACTACTAAAGGAAAAATTGTGTTACCTTTTTAAAATTTCCTGTTCCCCTTAATAATTTTTATGTTCTTGTGAGGGAAAAAGTAAGACATGTTTAATTTTATTTGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000866-'8-14,'8-11,10-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGATTATGCACCACCACC
R:
CGTCACGTGAGCTGCTGTAAT
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]