GgaEX6033288 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:4422127-4423542:-
Coord C1 exon
chr4:4423417-4423542
Coord A exon
chr4:4423235-4423338
Coord C2 exon
chr4:4422127-4422739
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTGTACTAAGTCTCAGTAGTCT
3' ss Score
-3.6
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTACTCGAGCAGAGATTACCCCAGTTCCAGGGACACACGGGACTATGCACCACCTCCGCGTGACTATGCGTATCGTGATTATGGTCATTCCAGTTCACGTGATGAATACCCCTCCAGGGGCTATAG
Seq A exon
TCTTTCCTCTTACAGCGATCGTGATGGATACGGTGGTGGACGTGACAGAGACTACTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq C2 exon
GTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGATATGATGATTACGGCAGCACACGTGATGGATATGGAAGCCGAGAAAGTTACTCAAGCAGCAGAAGTGATGTCTACTCAAGTGGCCGTGATCGTGTTGGAAGACAAGACAGGGGTCTTCCCCCATCCATGGAAAGGGGCTATCCACCTCCTCGTGATTCATACAGTAGTTCAAGCCGCGGAGCACCCAGAGGTGGTGGCCGTGGCGGAAGCAGATCTGACAGAGGTGGAGGCAGAAGCAGATACTAAAAACACTCTTAACTTTTTTTGGACCAAGACATTACTTCTCAAACAAATTAAAAAAAAAAAAGTGGAAGTTCTATCTTTACTACCAGAGGACTACTAAAAGGAAAAGTTGTTTTTACCTTTTTTTATTGTTGCCTGTTAAGTTTTCCCCTCCATGACTTTTATGCTTTTGTGAAGAAAAGTTAAACCAGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457-'14-18,'14-16,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGATGAATACCCCTCCAGG
R:
GAGGAGGTGGATAGCCCCTTT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]