BtaEX6005029 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013308 | RBMX
Description
Bos taurus RNA binding motif protein, X-linked (RBMX), mRNA. [Source:RefSeq mRNA;Acc:NM_001172039]
Coordinates
chrX:20457677-20459140:-
Coord C1 exon
chrX:20459015-20459140
Coord A exon
chrX:20458832-20458914
Coord C2 exon
chrX:20457677-20458202
Length
83 bp
Sequences
Splice sites
3' ss Seq
CATATTTCTTGTTAATATAGTGA
3' ss Score
3.17
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CTATTCAAGCAGAGATTACCCAAGTTCTCGTGATACAAGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCACGTGATGACTATCCATCAAGAGGCTATAG
Seq A exon
TGATAGAGATGGCTATGGTCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATG
Seq C2 exon
GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGAGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATATTAAAAACAAACAACTTGGACCAAAATCCCTGTTCAAAGAAACAAACAAAAGTGGAACCTGTTCTATCATAACTACCCAAGGACTACTAAAAGGAAAGATTGTGTTACTTTTTTTAAATTTCCTGTTAAGTTCCCTTTCCATAATTTTTATGTTCTTGTGAGGAAAGAAAGTAAAACATGTTTAATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013308-'9-13,'9-10,10-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACCACCACCAAGAGATT
R:
CGTCACGTGAGCTGCTGTAAT
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]