MmuEX6049692 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79472896-79474143:+
Coord C1 exon
chr10:79472896-79473011
Coord A exon
chr10:79473781-79473925
Coord C2 exon
chr10:79474020-79474143
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGTCACTCTTTCTTCCCAGGTG
3' ss Score
11.69
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
TGTAACTACTTGGTGGCAGTGTGCATAGTGGTGTTCATCTTCCTAGCCTTTCAGCAGAGAGCCTATGTGGCCCCAGAGAACCTGCCTGCTCTCTTACTCTTGCTTCTGCTGTATGG
Seq A exon
GTGGTCTATCACACCACTCATGTACCCAGCCTCCTTCTTCTTCTCAGTGCCCAGCACGGCCTATGTGGTGCTCACCTGCATCAACCTCTTCATTGGCATCAATAGCAGCATGGCCACCTTCGTGCTAGAACTGCTTTCAGATCAG
Seq C2 exon
AACCTGCAAGAAGTGAGCCGGATCCTGAAACAAGTGTTTCTTATTTTCCCCCACTTTTGCCTTGGCCGAGGGCTCATTGACATGGTTCGGAACCAGGCCATGGCAGATGCCTTTGAGCGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'38-43,'38-41,39-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.2=100)
A:
PF126982=ABC2_membrane_3=FE(14.2=100)
C2:
PF126982=ABC2_membrane_3=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACTTGGTGGCAGTGTGC
R:
TAAGCGCTCAAAGGCATCTGC
Band lengths:
236-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: