GgaEX6027986 @ galGal3
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2379396-2379953:-
Coord C1 exon
chr28:2379838-2379953
Coord A exon
chr28:2379610-2379754
Coord C2 exon
chr28:2379396-2379531
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCCTCTGCCCTCCAGGTG
3' ss Score
12.09
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGCAACTACCTGGTCCCTGCACTGCTGGTTGTCCTCATCTTCCTCTGCTTCCAGCAGAAGTCCTACGTGTCCTCAGCCAACCTGCCTGCCCTGGTGCTGCTGCTGCTGCTCTACGG
Seq A exon
GTGGTCCATCACCCCCCTGATGTACCCGGCCTCCTTCCTCTTCAGCATCCCCAGCACCGCCTACGTGGCCCTGACGTGCGTCAACCTCTTCATTGGCATCAATGGCAGCGTGGCCACCTTCGTGCTGGAGCTCTTTGTGGACAAG
Seq C2 exon
AAGCTCAACAACATCAACCGCATCCTGAAGAAGGTCTTCCTCATCTTCCCCCACTTCTGCCTGGGCCGAGGCTTAATTGACATGGTGAAGAACCAGGCGATGGCCGATGCCTTCGAGAGGTTCGGTGAGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.6=100)
A:
PF126982=ABC2_membrane_3=FE(14.6=100)
C2:
PF126982=ABC2_membrane_3=FE(13.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACCTGGTCCCTGCACTG
R:
TCTGCACTCACCGAACCTCTC
Band lengths:
248-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]