RnoEX0004933 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12746423-12747791:-
Coord C1 exon
chr7:12747614-12747791
Coord A exon
chr7:12746648-12746792
Coord C2 exon
chr7:12746423-12746546
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGTCACCCTTTCCTCCCAGCTG
3' ss Score
8.95
5' ss Seq
CAGGTGGTA
5' ss Score
0.39
Exon sequences
Seq C1 exon
GATAGCCTCCTCTGTGGATGTTCTTGTCTCTATCTGTGTGGTCTTCGCCATGTCATTTGTCCCAGCCAGCTTTACCCTAGTCCTCATAGAAGAACGCATCACCAGAGCCAAGCATCTGCAGCTGGTCAGTGGCCTGCCCCAAACCCTCTACTGGCTTGGCAACTTCCTCTGGGACATG
Seq A exon
CTGGTCTATTACGCCACTCATGTACCCAGCCTCCTTCTTCTTCTCCGTGCCCAGCACGGCCTATGTGGTGCTCACCTGCATCAACCTCTTCATCGGCATCAACAGCAGCATGGCCACTTTCGTGCTGGAACTGCTTTCAGATCAG
Seq C2 exon
AACCTTCAAGAAGTGAGCCGGATCCTGAAGCAAGTGTTTCTTATCTTCCCCCACTTCTGCCTTGGCCGAGGGCTCATTGACATGGTGCGGAACCAGGCCATGGCAGATGCCTTTGAGCGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.0=100)
A:
PF126982=ABC2_membrane_3=FE(14.6=100)
C2:
PF126982=ABC2_membrane_3=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCATGTCATTTGTCCCAG
R:
TAAGCGCTCAAAGGCATCTGC
Band lengths:
257-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]