MmuEX6049695 @ mm10
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80008663-80010035:+
Coord C1 exon
chr10:80008663-80008840
Coord A exon
chr10:80008928-80009097
Coord C2 exon
chr10:80009858-80010035
Length
170 bp
Sequences
Splice sites
3' ss Seq
AAGGCCCTTGCTCTGCCCAGATC
3' ss Score
4.63
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ATATGGGGGCTTCTCCCTGGGAGGCCGAGATCCAGACCTGCCCACAGGGCATGAGGTGGTCCGCACATTGGCAGAGATTCGGGCACTGCTGAGCCCCCAACCTGGGAATGCGCTAGACCGTATCCTGAACAACCTCACTCAGTGGGCCCTTGGCCTTGATGCTCGGAACAGCCTCAAG
Seq A exon
ATCTGGTTCAACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACATGCCCTCCTACCATCTGGTCCAGTCCGCCATGCCCACAGCATCACTACACTCAACCATCCTTTGAACTTGACCAAGGAGCAGCTATCTGAAGCTACACT
Seq C2 exon
GATAGCCTCCTCTGTGGATGTCCTTGTCTCCATCTGTGTGGTCTTCGCCATGTCATTTGTCCCAGCCAGCTTTACCCTGGTCCTCATAGAGGAACGCATCACCAGAGCCAAGCATCTGCAGCTGGTCAGCGGCCTGCCCCAAACCCTCTATTGGCTTGGCAACTTCCTCTGGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'45-65,'45-64,53-65=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(17.5=98.3)
A:
PF126982=ABC2_membrane_3=FE(16.6=100)
C2:
PF126982=ABC2_membrane_3=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCTAGACCGTATCCTGAA
R:
CATGTCCCAGAGGAAGTTGCC
Band lengths:
248-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types