DreEX6090519 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5694386-5696613:+
Coord C1 exon
chr11:5694386-5694460
Coord A exon
chr11:5694544-5694713
Coord C2 exon
chr11:5696436-5696613
Length
170 bp
Sequences
Splice sites
3' ss Seq
TAATCTGTTCCCTCTCTCAGGTC
3' ss Score
10.93
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
AATGGCTCTTTAGATCAGCTCCTTCAAAGACTACCAGATGTGCTTTCAGGACTCACCAGCCAAAACAATGTGAAG
Seq A exon
GTCTGGTTTAATAATAAAGGATGGCATGCCATGGCGTCGTTTGTGAATATTATGAACAACGGTCTTCTTCGTGCCAACCTGCCACCCAAGACAGAAAGACGCAAATATGGAATAACAGCCTACAATCACCCTCTCAACCTCACAAAGGAGCAGCTGACAGAGATGGCCCT
Seq C2 exon
GATGACCACCTCTGTGGATGTTCTGGTGTCCATATGTGTTATTTTTGCCATGTCCTTTGTTCCTGCTAGTTTTGTCCTGTTCCTTATTGAGGAACGGGTCAGTAAATCAAAACACCTGCAGTTTGTCAGTGGAGTGAAACCCATCCTGTACTGGACCACCAACTACGTATGGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'33-34,'33-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.4=100)
A:
PF126982=ABC2_membrane_3=FE(15.0=100)
C2:
PF126982=ABC2_membrane_3=FE(15.8=100)
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCTTTAGATCAGCTCCT
R:
CCCATACGTAGTTGGTGGTCC
Band lengths:
246-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]