RnoEX6021851 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69878615-69880892:-
Coord C1 exon
chr5:69880818-69880892
Coord A exon
chr5:69880195-69880347
Coord C2 exon
chr5:69878615-69878631
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTTGGTCTGTTTTACTTCAGGTG
3' ss Score
8.8
5' ss Seq
CAGCTCTCC
5' ss Score
-7.43
Exon sequences
Seq C1 exon
GACAGCTCTGCAGATCGGTTCCTCAGCAGCTTGGGAAGGTTCATGACAGGACTGGACACCAAAAACAATGTCAAG
Seq A exon
GTGTGGTTCAATAACAAGGGCTGGCATGCCATCAGTTCATTCCTGAATGTCATCAACAATGCCATTCTCCGGGCCAACCTGCAGAAGGGAGAGAACCCAAGCCAGTATGGGATTACTGCTTTCAACCATCCCCTGAACCTCACCAAGCAGCAG
Seq C2 exon
CTCTCGGAGGTGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'47-47,'47-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(4.6=100)
A:
PF126982=ABC2_membrane_3=FE(9.5=100)
C2:
PF126982=ABC2_membrane_3=FE(1.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]