DreEX6056957 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6186222-6187436:+
Coord C1 exon
chr14:6186222-6186302
Coord A exon
chr14:6186990-6187159
Coord C2 exon
chr14:6187259-6187436
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTGTACTTTCAGATT
3' ss Score
10.47
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACTCAGGATCAGCAGCCGACCGTTTCTTAAAAAGCCTGTCTGCATTTATCAATGGGTTGGACACTAAGAATAATGTCAAG
Seq A exon
ATTTGGTTTAATAACAAGGGCTGGCACAGTATTGGGGCCTTCCTCAATGTAATGAACAACGGTATCTTGCGTGCAAACTTACCACCCGGTAAAGACCCCAGTGAGTTTGGCATCACTGCGTACAACCATCCACTCAATCTGACCAAGGAACAGCTTTCTCAAGTGGCGCT
Seq C2 exon
GATGACTACCTCGGTAGACGTGCTGGTTTCCATCTGCGTGATCTTCGCCATGTCTTTCGTCCCTGCTAGCTTTGTTGTCTTCCTCATCCAAGAGCGAGTGAACAAAGCCAAGCACATGCAGTTTATCAGTGGAGTTCAGCCATATCTCTACTGGCTGGCAAACTTTCTCTGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'39-43,'39-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.0=100)
A:
PF126982=ABC2_membrane_3=FE(17.2=100)
C2:
PF126982=ABC2_membrane_3=FE(18.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCCGACCGTTTCTTAA
R:
CCAGAGAAAGTTTGCCAGCCA
Band lengths:
243-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]