MmuEX6093494 @ mm10
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53048956-53051009:-
Coord C1 exon
chr4:53050935-53051009
Coord A exon
chr4:53050289-53050458
Coord C2 exon
chr4:53048956-53049133
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTTGGTCTGTTTTACTTCAGGTG
3' ss Score
10.02
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GACAGCTCCGCAGATCGCTTCCTCAGCAGCCTGGGAAGGTTCATGGCAGGGCTGGATACGAAAAACAATGTCAAG
Seq A exon
GTGTGGTTCAATAACAAGGGCTGGCATGCTATCAGTTCGTTCCTGAATGTCATCAACAATGCCATTCTCCGGGCCAACCTGCAGAAGGGAGAGAACCCGAGCCAGTATGGAATCACTGCTTTCAACCACCCCTTGAACCTCACTAAACAGCAGCTCTCAGAGGTGGCTCT
Seq C2 exon
GATGACCACCTCTGTCGACGTCCTCGTGTCTATCTGTGTCATCTTTGCGATGTCCTTTGTCCCTGCCAGCTTTGTTGTGTTCCTGATCCAGGAGCGTGTGAGCAAAGCCAAGCATCTTCAGTTCATCAGCGGCGTGAAGCCTGTCATCTACTGGCTGTCCAATTTTGTCTGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'49-53,'49-52,51-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(4.6=100)
A:
PF126982=ABC2_membrane_3=FE(10.6=100)
C2:
PF126982=ABC2_membrane_3=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCAGATCGCTTCCTCAG
R:
TCCCAGACAAAATTGGACAGCC
Band lengths:
244-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types