GgaEX1005311 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53610156-53612062:-
Coord C1 exon
chrZ:53611988-53612062
Coord A exon
chrZ:53611403-53611572
Coord C2 exon
chrZ:53610156-53610202
Length
170 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGTGGTCTCTTGCAGGTG
3' ss Score
12.32
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGGAGTTCTGGAGATAGGTTTCTCAACAACTTGGCAAGTTTCATGAAAGGTCTGGACACAAAGAACAACGTGAAG
Seq A exon
GTGTGGTTCAACAACAAGGGTTGGCATGCCATTGCCTCCTTCCTGAATGTGATCAACAATGCTATTCTTCGGGCCAACCTGCAGCAGGGCAAGAACCCTAGTGCTTATGGGATCACCGCCTTCAATCACCCACTCAACTTGACTAAGCAGCAGCTCTCCGAAGTGGCTCT
Seq C2 exon
GATGACCACATCAGTGGATGTCCTGGTCTCCATCTGTGTGATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'44-58,'44-57,45-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.3=100)
A:
PF126982=ABC2_membrane_3=FE(14.7=100)
C2:
PF126982=ABC2_membrane_3=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTTCTGGAGATAGGTTTCT
R:
CAAAGATCACACAGATGGAGACCA
Band lengths:
122-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]