GgaEX1005311 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54557531-54559568:-
Coord C1 exon
chrZ:54559494-54559568
Coord A exon
chrZ:54558909-54559078
Coord C2 exon
chrZ:54557531-54557708
Length
170 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGTGGTCTCTTGCAGGTG
3' ss Score
12.32
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGGAGTTCTGGAGATAGGTTTCTCAACAACTTGGCAAGTTTCATGAAAGGTCTGGACACAAAGAACAACGTGAAG
Seq A exon
GTGTGGTTCAACAACAAGGGTTGGCATGCCATTGCCTCCTTCCTGAATGTGATCAACAATGCTATTCTTCGGGCCAACCTGCAGCAGGGCAAGAACCCTAGTGCTTATGGGATCACCGCCTTCAATCACCCACTCAACTTGACTAAGCAGCAGCTCTCCGAAGTGGCTCT
Seq C2 exon
GATGACCACATCAGTGGATGTCCTGGTCTCCATCTGTGTGATCTTTGCCATGTCCTTTGTTCCTGCCAGCTTTGTGGTGTTCCTTATCCAGGAACGTGTCAGTAAGGCTAAGCACTTGCAGTTCATCAGTGGTGTGAAGCCTGTGATCTACTGGCTGGCCAACTTTGTCTGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'48-65,'48-64,49-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.6=100)
A:
PF126982=ABC2_membrane_3=FE(15.3=100)
C2:
PF126982=ABC2_membrane_3=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTTCTGGAGATAGGTTTCT
R:
ATCCCAGACAAAGTTGGCCAG
Band lengths:
250-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]