GgaEX0003085 @ galGal3
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2380051-2380663:-
Coord C1 exon
chr28:2380589-2380663
Coord A exon
chr28:2380292-2380461
Coord C2 exon
chr28:2380051-2380228
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGAGCACCCTTGGGCTGCAGGTG
3' ss Score
4.89
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGCAGCCCCATGGATCGGTTCCTGGGCAACCTGAGCCACTTCTTTGAGGGCCTGGATGCACGCAGGAACATCAAG
Seq A exon
GTGTGGTTCAACAACAAGGGCTGGCACGCCATGGTCGCCTTCCTCAACGTGGCCAGCAATGGGCTGCTGAGGGCACAGCTGCCTGCAGGCTCTGACCCCGCACTCTATGGCATCACGGCCATCAACCACCCCCTGAACCTCACCAAGGAGCAGCTCTCGGAGGCTGCACT
Seq C2 exon
GATGGCCACATCGGTGGACGTGTTGGTCTCCATCTGCGTGATCTTCGCCATGTCCTTCATCCCGGCCAGCTTTGTGCTCTTCCTCATCGAGGAGCGGGTCAGCAAGGCCAAGCATCTGCAGTTCATCAGTGGGATGAAGCCCGTCACCTACTGGCTGGGCAACTTTGCTTGGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(2.4=100)
A:
PF126982=ABC2_membrane_3=FE(17.0=100)
C2:
PF126982=ABC2_membrane_3=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCCCCATGGATCGG
R:
CAAAGTTGCCCAGCCAGTAGG
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]