MmuEX6049716 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79459239-79460607:+
Coord C1 exon
chr10:79459239-79459333
Coord A exon
chr10:79460353-79460425
Coord C2 exon
chr10:79460514-79460607
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTCCGCTGTTTCCGGTCCAGAGT
3' ss Score
7.6
5' ss Seq
CCGGTAACG
5' ss Score
7.34
Exon sequences
Seq C1 exon
GTCCGCAATTGAGCGGGGCTCCACTTAAAGGGGCCGCGCTCCCCCGCCGAGGCCGAGAGGAGCGAAAGTGGATGGAGTTTGGGGGCCTCAGAACG
Seq A exon
AGTCATCATGGCCTTAGGCACACAGCTGATGCTTCTGCTGTGGAAAAATTACACCTATCGACGGAGACAACCG
Seq C2 exon
ATCCAACTACTAGTGGAGTTGCTTTGGCCCCTCTTCCTCTTCTTCATCCTAGTGGCTGTCCGTCACTCCCACCCCCCTCTGGAGCATCACGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGGGCTCCACTTAAAGG
R:
ATTCGTGATGCTCCAGAGGGG
Band lengths:
178-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: