RnoEX0004912 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12761013-12762341:-
Coord C1 exon
chr7:12762194-12762341
Coord A exon
chr7:12761196-12761268
Coord C2 exon
chr7:12761013-12761106
Length
73 bp
Sequences
Splice sites
3' ss Seq
CCGCTCTGTTTCCGGTTCAGAGT
3' ss Score
8.65
5' ss Seq
CCGGTAACA
5' ss Score
5.92
Exon sequences
Seq C1 exon
GGCCGGGAGGAGCGAAGGTGGATGGAGTTTGGGGGCCTCAGGACGGTGAGAAAATCCCCGAGAGGGTGGAAGGTAGAGCCTAAAGAACTGGGGATGCCGTGGGGCAAGGATTGGCGGAGCCACGTTCCCTGGTAATTTGGGATTCCAG
Seq A exon
AGTCATCATGGCTTTCTGCACACAGTTGATGCTCCTACTGTGGAAAAATTACACATATCGACGGAGACAACCG
Seq C2 exon
ATCCAACTAGTAGTGGAGTTACTGTGGCCCCTCTTCCTCTTCTTCATCCTAGTGGCCGTCCGTCACTCACACCCCCCACTGGAGCACCACGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGTGGATGGAGTTTGGG
R:
GGGGCCACAGTAACTCCACTA
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]