HsaEX6091454 @ hg19
Exon Skipping
Gene
ENSG00000064687 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:37]
Coordinates
chr19:1040102-1041602:+
Coord C1 exon
chr19:1040102-1040195
Coord A exon
chr19:1041224-1041426
Coord C2 exon
chr19:1041509-1041602
Length
203 bp
Sequences
Splice sites
3' ss Seq
GTTTGCCTCGCTCTAATCAGAGC
3' ss Score
7.5
5' ss Seq
CCGGTAACG
5' ss Score
7.34
Exon sequences
Seq C1 exon
GGGCAAGCTCAGCGCACTTGGCTTAAGGGGCGGCGCGCTCCCTGCCTGCTGCTGGGCGGAGGGAAGGCGGCAAGAGCTGCGGAGCCCCTGGAAG
Seq A exon
AGCTTCCAGGAACCCTGCGCTGTGGGATAAAGGAATGAGGTTCAGAAAGGGGCAGGGAGTTGCCCGCAGCCGCACCGCACGTCTTCAGCCCGACCGTTGTCCTGACCTCTCTGTCCCGTCCCCTGCCCAGTCTCACCATGGCCTTCTGGACACAGCTGATGCTGCTGCTCTGGAAGAATTTCATGTATCGCCGGAGACAGCCG
Seq C2 exon
GTCCAGCTCCTGGTCGAATTGCTGTGGCCTCTCTTCCTCTTCTTCATCCTGGTGGCTGTTCGCCACTCCCACCCGCCCCTGGAGCACCATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCAGCGCACTTGGCTTA
R:
GGGTGGGAGTGGCGAACAG
Band lengths:
164-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)