MmuEX6049829 @ mm10
Exon Skipping
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80341589-80342222:-
Coord C1 exon
chr10:80342059-80342222
Coord A exon
chr10:80341743-80341941
Coord C2 exon
chr10:80341589-80341660
Length
199 bp
Sequences
Splice sites
3' ss Seq
CCTGTGCCCTCCCGCTCCAGGTG
3' ss Score
11.94
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CGCTGGTTACCCGCGGCGGGCACTACGTGCTCAACGGTGATGGGGTGCTCAGCCCGCCTGGCACCTACGAGGCTGCGGGCACCCGAGTGGTTTACACCCGGAGTGCGGGCCCAGAGGAGACTCTGCAGGCGACCGGCCCCACCTCCCAGGAGCTGCTGTTACAG
Seq A exon
GTGCTGCTGCGGGAGCCCAACCCAGGCGTACACTTCGAGTTCTGGCTGCCCCGGGAGCGCTATGGCCCCTTTCAGGCTCAGGTGCAGGCCCTGGGCTGGCCCTTGCGACAGCCTCAGCCTCGGGAGGTGGAGCCACAGCCTGCAGAGACTCCTGTAGTCCCCGAGGCCATCCCTGCCCGTGTTGCATCCCTGCCACCAG
Seq C2 exon
ACCCCTGCGGGCCATGCCCCGACAGCCGTGGTCGCGCACACCGGCTTCTTCACTACTGTGGCAGCGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.433 C2=0.360
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.1=100)
A:
PF059869=ADAM_spacer1=PD(14.5=23.9)
C2:
PF0175916=NTR=PU(7.7=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAACGGTGATGGGG
R:
CAAAGTCGCTGCCACAGTAGT
Band lengths:
210-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types