RnoEX0006947 @ rn6
Exon Skipping
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12235091-12235725:+
Coord C1 exon
chr7:12235091-12235254
Coord A exon
chr7:12235374-12235572
Coord C2 exon
chr7:12235654-12235725
Length
199 bp
Sequences
Splice sites
3' ss Seq
AGTGCGCTCTCCCGCTCCAGGTG
3' ss Score
10.03
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CGCTGGTGACCCGCGACGGGCACTACGTGCTCAACGGTGATGGTGTGCTCAGCCTGCCTGGCACCTATGAGGCCGCGGGCACCCGCGTGGTTTACACCCGCAGTGCGGGTCCGGAGGAGACTCTGCAGGCTACCGGGCCCACCTCCCAGGAGCTGTTGTTGCAG
Seq A exon
GTGCTGCTGCGGGAGCCCAACCCGGGCGTGCACTTCGAGTTCTGGCTGCCCCGAGAGCGCTATGGCTCCTTCCAGGCTCAGGTGCACGCTCTGGGCTGGCCCCTGCGACAGCCTCAGCCTCGGGAGGTGGAGCCGCAGCCTGCAGAGACCACTGTGGTCCCCGAGGCCATCCCTGCCCGTGTTGCATCCCTGGCACCAG
Seq C2 exon
ACCCCTGCGGGCCATGCCCTGACAGCCGTGGTCGCGCACACCGGCTTCTTCACTACTGTGGCAGCGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAACGGTGATGGTGTG
R:
CAAAGTCGCTGCCACAGTAGT
Band lengths:
210-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]